Pig QTL Database

Release 55
(Dec 23, 2024)

Curator: Cari Park
Curated: 2019-04-05
Updated: 2024-04-23

Publication # 30832586 Details

Authors:	González-Prendes R, Quintanilla R, Mármol-Sánchez E, Pena RN, Ballester M, Cardoso TF, Manunza A, Casellas J, Cánovas Á, Díaz I, Noguera JL, Castelló A, Mercadé A, Amills M (Contact: marcel.amills@uab.cat)
Affiliation:	Departament de Ciència Animal i dels Aliments, Facultat de Veterinària, Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain
Title:	Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles
Journal:	BMC Genomics, 20(1): 170 (2019)	DOI: 10.1186/s12864-019-5557-9
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Palmitic acid content reported for chromosome(s): Chr.5: Asso:169936, Asso:169956, Asso:169957. QTL for Stearic acid content reported for chromosome(s): Chr.14: Asso:169937, Asso:169938, Asso:169939, Asso:169940, Asso:169944, Asso:169945, Asso:169962, Asso:169963, Asso:169968, Asso:169969, Asso:169970, Asso:169971, Asso:169972, Asso:169973, Asso:169978, Asso:169979, Asso:169984, Asso:169985, Asso:169990, Asso:169991, Asso:169996, Asso:169997. QTL for Vaccenic acid content reported for chromosome(s): Chr.14: Asso:169941, Asso:169946, Asso:169947, Asso:169948. QTL for Saturated fatty acid content reported for chromosome(s): Chr.14: Asso:169942, Asso:169949, Asso:169950, Asso:169964, Asso:169965, Asso:169974, Asso:169975, Asso:169980, Asso:169981, Asso:169986, Asso:169987, Asso:169992, Asso:169993, Asso:169998, Asso:169999. QTL for Unsaturated fatty acid content reported for chromosome(s): Chr.14: Asso:169943, Asso:169951, Asso:169966, Asso:169967, Asso:169976, Asso:169977, Asso:169982, Asso:169983, Asso:169988, Asso:169989, Asso:169994, Asso:169995, Asso:170000, Asso:170001. QTL for Eicosatrienoic acid content reported for chromosome(s): Chr.18: Asso:169952. QTL for Myristic acid content reported for chromosome(s): Chr.9: Asso:169953, Asso:169958, Asso:169959, Asso:169960, Asso:169961. QTL for Palmitoleic acid content reported for chromosome(s): Chr.2: Asso:169954. QTL for Margaric acid content reported for chromosome(s): Chr.2: Asso:169955. QTL/association Reported by chromosomes: Chr.2 (2), Chr.5 (3), Chr.9 (5), Chr.14 (55), Chr.18 (1). Number of gene-based eQTL/associations: eQTL for armadillo-like helical domain containing 3 (ARMH3): Chr.14: eQTL:181071; eQTL for F-box and WD repeat domain containing 4 (FBXW4): Chr.14: eQTL:181069; eQTL for potassium voltage-gated channel interacting protein 2 (KCNIP2): Chr.14: eQTL:181070; eQTL for hypoxia inducible factor 1 subunit alpha inhibitor (HIF1AN): Chr.14: eQTL:181068; eQTL for lysosomal trafficking regulator (LYST): Chr.14: eQTL:181064; eQTL for annexin A8 (ANXA8): Chr.14: eQTL:181065; eQTL for cytochrome c oxidase assembly protein COX15 homolog (LOC100156375): Chr.14: eQTL:181066; eQTL for biogenesis of lysosomal organelles complex 1 subunit 2 (BLOC1S2): Chr.14: eQTL:181067; eQTL for galectin 8 (LGALS8): Chr.14: eQTL:181063; eQTL for gamma-glutamylcyclotransferase (GGCT): Chr.18: eQTL:181073; eQTL for FKBP prolyl isomerase 14 (FKBP14): Chr.18: eQTL:181074; eQTL for aquaporin 1 (AQP1): Chr.18: eQTL:181072; eQTL for WAS/WASL interacting protein family member 3 (WIPF3): Chr.18: eQTL:181075;

Cite this Dataset:

Animal QTLdb: Dataset from González-Prendes R, Quintanilla R, Mármol-Sánchez E, Pena RN, Ballester M, Cardoso TF, Manunza A, Casellas J, Cánovas Á, Díaz I, Noguera JL, Castelló A, Mercadé A, Amills M (2019). Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles. BMC genomics, 20(1): 170; Curated into QTLdb on 2019-04-05. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=ZcUq0H7AdO

González-Prendes R, Quintanilla R, Mármol-Sánchez E, Pena RN, Ballester M, Cardoso TF, Manunza A, Casellas J, Cánovas Á, Díaz I, Noguera JL, Castelló A, Mercadé A, Amills M (2019). Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles. BMC genomics, 20(1): 170; DOI: https://dx.doi.org/10.1186/s12864-019-5557-9

Publication # 30832586 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations: