National Animal Genome Research - Bioinformatics Coordination Program
Red Hat Linux / Dual-Processor Server
(Commissioned 02:17:33 PM, August 16, 2004)

CPU: 0% full (0 out of 200)
RAM: 0% full
Welcome to NAGRP Animal Genome Server

Capacity:

  1. NewTech SUPERMICRO X5DAL-G Intel E7505 chipset, Intel 82545EM Gigabit Ethernet
  2. Red Hat Enterprise Linux AS release 3 (Taroon Update 9)
  3. CPU: 2X Intel XEON3.06A 1M 533MHZ 604PIN
  4. HD: WD 160GB ATA100 7200 RPM
  5. Storage: 4 X WD 250GB (7200) #WD2500JD SATA 150 8MB Buffer (700GB useable)

An ad hoc list of software installed and new functions on this server:

  1. MySQL installed (Aug. 18, 2004)
    1. Crittenden Genomics References now managed with MySQL (Apr. 17, 2005)
    2. ANGENMAP mails archive ported to MySQL for search (May 12, 2005)
    3. AquaGenomics Community Directory and Publication Archives (Feb. 19, 2006)
  2. MySQL Browser (Oct. 15, 2004)
  3. NAGRP Blast server (Nov. 1, 2004)
    1.  TIGR Indices sequences are available for blast for the following species: Cattle, Pigs, Chicken, Catfish, Salmon, Rainbow trout (February 25, 2005)
    2. Gene Ontology sequences database for blast (Mar. 16, 2005)
    3.  UniGene sequences are available for blast for the following species: human, cattle, chicken, pigs (April 6, 2005)
    4. Cattle Genome Sequences for blast (June 17, 2005)
    5. Pig Genome Sequences for blast (July 7, 2005)
    6. Blast Query the Bovine SNP Database (Jan 27, 2006)
  4. Postgres server (Dec. 10, 2004)
    1. Animal Trait Ontology (ATO) being developed on Postgres (Dec. 28, 2005)
    2. Collaborative Ontology Editor (COB) is connected to ATO on postgres (Jan. 2, 2006)
  5. Pig QTL database (Dec. 20, 2004)
    1. QTLdb Curator/Editor Tools (Jun. 8, 2005)
    2. PigQTLdb Extension: Comparitive Mapping with RH data to human maps (Dec. 15, 2005)
    3. PigQTLdb Extension: QTL Alignment with Pig BACend Sequences FPC Maps (Jan. 3, 2006)
    4. The QTLdb tool has been extended to include QTL data from cattle and chicken (Aug. 15, 2006)
  6. GBrowse (Jan. 30, 2005)
  7.  Bioperl installed (Feb. 17, 2005)
  8. Apache/PHP servers are installed (Nov. 24, 2004)
    1. NAGRP web sites for pig and cattle are moved to this server (Jul. 30, 2005)
    2. NAGRP web sites for sheep is established (Feb. 21, 2007)
  9. Genetic Analysis Software Database (Oct. 19, 2005)
  10. NAGRP Bioinformatics Tool Box established (Mar. 19, 2006)

Contact: NAGRP Bioinfo Team

Last modified: Apr 03 2018 09:56