European Molecular
Biology Computing Network - Biocomputing Tutorials DNA Sequence Analysis Manuals

Manuals


Table of Contents

Staden
GCG
EGCG


Manuals for the DNA Sequence Analysis Programme Packages

Programme PackageHTML - onlineHTML - downloadPostScript
Staden -
Version 4
Gap4, Trev & Sip4 Gap4, Trev & Sip4 (tar.gz compressed) Gap4, Trev & Sip4 (gz compressed)
Staden -
Version 3 1
na Complete 1994 manual (tar.gz compressed) Complete 1994 manual (gz compressed)
GCG Program Manual Ver. 8.1 All programmesna All programmes 2
GCG User Guide Ver. 8.1 UNIX environment (soon!) naUNIX environment 2
GCG WPI Guide Ver. 8.1 X-windows environment (soon?)na X-windows environment 2
GCG Release Notes Ver. 8.1 What's new (soon?)na What's new 2
GCG Data Files Manual Ver. 8.1 Practice Data (soon?)na Practice Data 2
EGCG Program Manual Ver. 8.1 All programmes nana
EGCG Program Manual Ver. 8.1 All programmes, ordered by function All programmes, by function (tar.Z compressed) na
EGCG Release Notes Ver. 8.0 What's newnana
EGCG Release Notes Ver. 8.1 na What's new (text file)na

1 The Complete 1994 Staden Manual Version 3 is also available in RTF format (gz compressed).
2 GCG documents as PostScript files are only available to registered users of the HGMP EMBnet Node! If you are a registered user at HGMP, follow the example FTP session below to download the postscript files.


prompt> ftp menu.hgmp.mrc.ac.uk
Connected to tin.hgmp.mrc.ac.uk.
220 tin FTP server (UNIX(r) System V Release 4.0) ready.
Name (menu.hgmp.mrc.ac.uk:youruserID): youruserID 
331 Password required for youruserID. yourpassword (NB: This will not echo!)
230 User youruserID logged in.
ftp> bin
200 Type set to I.
ftp> prompt
Interactive mode off.
ftp> cd /packages/gcg/manual
250 CWD command successful.
ftp> dir
200 PORT command successful.
150 ASCII data connection for /bin/ls (130.225.13.135,4402) (0 bytes).
total 36
drwxrwxr-x   2 gcg      wisc         512 Dec 18  1995 GCGFigure
-rw-rw-r--   1 gcg      wisc         352 Jun  8  1995 README
-rw-rw-r--   1 gcg      wisc        2266 Oct 12  1995 README.data_files
-rw-rw-r--   1 gcg      wisc        2966 Oct 12  1995 README.program_manual
-rw-rw-r--   1 gcg      wisc         479 Oct 12  1995 README.release_notes
-rw-rw-r--   1 gcg      wisc        2013 Jun  7  1995 README.users_guide
-rw-rw-r--   1 gcg      wisc        1841 Jun  7  1995 README.wpi_guide
drwxrwxr-x   2 gcg      wisc        1024 Oct 13  1995 datafiles_manual
drwxrwxr-x   2 gcg      wisc        1024 Jun  8  1995 program_manual
drwxrwxr-x   2 gcg      wisc         512 Jun  8  1995 release_notes
drwxrwxr-x   2 gcg      wisc        1024 Jun  8  1995 users_guide
drwxrwxr-x   2 gcg      wisc        1024 Jun  8  1995 wpi_guide
226 ASCII Transfer complete.
ftp> cd users_guide
250 CWD command successful.
ftp> dir
200 PORT command successful.
150 ASCII data connection for /bin/ls (130.225.13.135,4403) (0 bytes).
total 30462
-rw-rw-r--   1 gcg      wisc      349150 Mar 20  1995 01title.ps
-rw-rw-r--   1 gcg      wisc      222169 Mar 20  1995 02toc.ps
-rw-rw-r--   1 gcg      wisc      442026 Mar 20  1995 03prefac.ps
-rw-rw-r--   1 gcg      wisc       45345 Mar 20  1995 04tab.ps
-rw-rw-r--   1 gcg      wisc       60857 Mar 20  1995 05ch1toc.ps
-rw-rw-r--   1 gcg      wisc     1486844 Mar 20  1995 06ch1get.ps
-rw-rw-r--   1 gcg      wisc       52704 Mar 20  1995 07tab.ps
-rw-rw-r--   1 gcg      wisc       60445 Mar 20  1995 08ch2toc.ps
-rw-rw-r--   1 gcg      wisc     1920786 Mar 20  1995 09ch2seq.ps
-rw-rw-r--   1 gcg      wisc       55875 Mar 20  1995 10tab.ps
-rw-rw-r--   1 gcg      wisc       67973 Mar 20  1995 11ch3toc.ps
-rw-rw-r--   1 gcg      wisc     2300597 Mar 20  1995 12ch3pro.ps
-rw-rw-r--   1 gcg      wisc       49256 Mar 20  1995 13tab.ps
-rw-rw-r--   1 gcg      wisc       49425 Mar 20  1995 14ch4toc.ps
-rw-rw-r--   1 gcg      wisc      608988 Mar 20  1995 15ch4dat.ps
-rw-rw-r--   1 gcg      wisc       49196 Mar 20  1995 16tab.ps
-rw-rw-r--   1 gcg      wisc       57879 Mar 20  1995 17ch5toc.ps
-rw-rw-r--   1 gcg      wisc     2421538 Mar 20  1995 18ch5gra.ps
-rw-rw-r--   1 gcg      wisc       49290 Mar 20  1995 19tab.ps
-rw-rw-r--   1 gcg      wisc      825075 Mar 20  1995 20appena.ps-rw-rw-r--   1 gcg      wisc      585362 Mar 20  1995 21appenb.ps
-rw-rw-r--   1 gcg      wisc     1408749 Mar 20  1995 22appenc.ps
-rw-rw-r--   1 gcg      wisc      352591 Mar 20  1995 23append.ps
-rw-rw-r--   1 gcg      wisc       46021 Mar 20  1995 24tab.ps
-rw-rw-r--   1 gcg      wisc      463969 Mar 20  1995 25gloss.ps
-rw-rw-r--   1 gcg      wisc      640536 Mar 20  1995 26index.ps
-rw-rw-r--   1 gcg      wisc      730330 Mar 20  1995 27commen.ps
-rw-rw-r--   1 gcg      wisc        2013 Mar 20  1995 readme.txt
226 ASCII Transfer complete.
ftp> mget *.ps
local: 01title.ps remote: 01title.ps
200 PORT command successful.
150 Binary data connection for 01title.ps (130.225.13.135,4405) (349150 bytes).
226 Binary Transfer complete.
349150 bytes received in 5.9 seconds (58 Kbytes/s)
local: 02toc.ps remote: 02toc.ps
200 PORT command successful.
150 Binary data connection for 02toc.ps (130.225.13.135,4406) (222169 bytes).
226 Binary Transfer complete.
222169 bytes received in 4.6 seconds (47 Kbytes/s)
local: 03prefac.ps remote: 03prefac.ps
200 PORT command successful.
150 Binary data connection for 03prefac.ps (130.225.13.135,4407) (442026 bytes).
226 Binary Transfer complete.
442026 bytes received in 5.6 seconds (77 Kbytes/s)

... (several file transfers omitted for brevity) ...

ftp> bye
Goodbye!
prompt>



Comments? Questions? Accolades?
Please send them to David Featherston   ( dwf@biobase.dk )
Updated on Thursday, 24 October, 1996
Copyright © 1995-1996 by Gary Williams, Peter Woollard, & David W. Featherston