"GO Slim" Classifications

GO_ROOT:Main GO classes
Source: http://www.geneontology.org
GO_basic:The basic version of the GO filtered such that the graph is guaranteed to be acyclic, and annotations can be propagated up the graph.
Source: http://www.geneontology.org/page/download-ontology
GO_Slim:"Generic GO Slims": http://www.geneontology.org/GO.slims.shtml
Source: ftp://ftp.geneontology.org/pub/go/GO_slims/goslim_generic.obo
GO_Slim2:The same as GO_slim except that the three root classes are removed.
GOA2GO:"GO Slims": http://www.geneontology.org/GO.slims.shtml
Source: ftp://ftp.geneontology.org/pub/go/GO_slims/goslim_goa.obo
EGAD2GO:"map2go": http://www.geneontology.org/GO.indices.shtml
Source: from http://www.geneontology.org/external2go/egad2go
MGI_GO_slim1:Mouse GDB GO Slim (manually edited)
Source: http://www.spatial.maine.edu/~mdolan/MGI_GO_Slim.html
MGI_GO_slim2:MGI GO Slim (Trimed for first level terms [marked with "="])
Source: http://www.spatial.maine.edu/~mdolan/mgi_go_slim.go
aqua classes:Aqua gene classes. From Dr. Jianbo Yao on analyzing R. Trout EST data set
Source: Dr. Jianbo Yao of West Virginia Univ. (Jianbo.Yao@mail.wvu.edu)
immune classes:Immune system gene classes.
Source: Dr. Toni Whistler of CDC (taw6@cdc.gov)

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