Genome Databases

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• Bovine genome sequence is assembled
  • GenBank/NCBI ( MapViewer | FTP | Blast | BACend seq )
  • Ensembl Genome Browser | CSIRO | UCSC
  • UCSC GBrowse (with RH Data) | NAGRP Blast Server
• Cattle Genome Information (NCBI)
• USDA-NRSP8 Community Data Repository (Iowa State University)

• EST, Genes, Gene Ontology, etc.
  • Gene Indices (BtGI)
  • Gene Ontology Annotation for Cow (Cow GOA, EBI) | ftp site
  • CowGO (Mississippi State University)
  • Cattle EST Gene Family Database through GBrowse (TXAM)
  • SIGENAE EST Contigs
  • Bovine QTL Viewer (Texas A&M University)
  • Cattle QTLdb (Iowa State University)
  • Dairy Cattle QTL Map Database (University of Sydney Site)
• SNPs
  • Cattle SNP database (NCBI)
  • SNPs from the Bovine Genome Sequencing Project (U. Alberta)
  • Blast Query the Bovine SNP Database (Iowa State U.)
• Bovine Genome Database (Texas A & M University)
• Bovmap Database (INRA, France)
• The Arkdb - Cattle (Roslin Institute)
• Cattle Genomics (CSIRO, Australia)
  • Interactive Bovine in-silico SNP Database
  • Bovine Genome Browser
  • Bacterial Artificial Chromosome Library Contiging Project
  • Genome Marker Map
• Bovine Tissues and DNA Inventory Database (HapMap Project)
• Cattle miROrtho: the catalogue of animal microRNA genes
• Cattle ortholog gene database