Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fertility traits:
37
Number of QTL / associations found:
31,363
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are fertility traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3251928.32427
29
9e-41
9.310345e-41
Chromosome 1
6526.74857
29
9e-41
9.310345e-41
Chromosome 2
1582.16699
29
9e-41
9.310345e-41
Chromosome 3
3413.61926
29
9e-41
9.310345e-41
Chromosome 4
184073.35387
29
9e-41
9.310345e-41
Chromosome 5
5230.55125
29
9e-41
9.310345e-41
Chromosome 6
8237.20714
29
9e-41
9.310345e-41
Chromosome 7
10722.96371
29
9e-41
9.310345e-41
Chromosome 8
17812.65100
29
9e-41
9.310345e-41
Chromosome 9
17018.24657
29
9e-41
9.310345e-41
Chromosome 10
15111.51299
29
9e-41
9.310345e-41
Chromosome 11
12296.30879
29
9e-41
9.310345e-41
Chromosome 12
22112.39954
29
9e-41
9.310345e-41
Chromosome 13
11195.60282
29
9e-41
9.310345e-41
Chromosome 14
10336.88388
29
9e-41
9.310345e-41
Chromosome 15
20735.76792
29
9e-41
9.310345e-41
Chromosome 16
18522.61995
29
9e-41
9.310345e-41
Chromosome 17
117434.45096
29
9e-41
9.310345e-41
Chromosome 18
6865.39847
29
9e-41
9.310345e-41
Chromosome 19
8617.12425
29
9e-41
9.310345e-41
Chromosome 20
20627.54847
29
9e-41
9.310345e-41
Chromosome 21
79056.20540
29
9e-41
9.310345e-41
Chromosome 22
24465.84633
29
9e-41
9.310345e-41
Chromosome 23
22505.78428
29
9e-41
9.310345e-41
Chromosome 24
27310.08147
29
9e-41
9.310345e-41
Chromosome 25
39.56077
29
0.09137874
9.137874e-02
Chromosome 26
21336.03557
29
9e-41
9.310345e-41
Chromosome 27
27496.93702
29
9e-41
9.310345e-41
Chromosome 28
27998.33364
29
9e-41
9.310345e-41
Chromosome 29
13667.66939
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 37 fertility traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at first calving
1239.02798
36
7.487846e-237
1.385252e-235
Age at puberty
18570.50914
36
9e-41
1.585714e-40
Age at second calving
136.78912
36
1.154432e-13
1.472896e-13
Antral follicle number
116.51444
36
2.017833e-10
2.262419e-10
Calving ability
1016.79341
36
4.734066e-190
5.838681e-189
Calving ease
9853.01951
36
9e-41
1.585714e-40
Calving interval
369.9318
36
5.028431e-57
3.100866e-56
Calving to conception interval
206.6533
36
7.82441e-26
1.113474e-25
Conception rate
2420.40677
36
9e-41
1.585714e-40
Dystocia
235.6395
36
3.615221e-31
5.573466e-31
Early embryonic survival
279.05543
36
2.333386e-39
3.924331e-39
Fertility index
393.12191
36
1.294511e-61
9.579381e-61
Fertility treatments
97.42069
36
1.457460e-07
1.540743e-07
Fertilization rate
219.7232
36
3.18567e-28
4.714792e-28
First service conception
968.46045
36
6.483153e-180
5.996917e-179
Gestation length
3663.02528
36
9e-41
1.585714e-40
Heat intensity
76.83655
36
8.733643e-05
8.733643e-05
Heifer pregnancy
354.30019
36
6.011138e-54
2.780151e-53
Inseminations per conception
8375.56592
36
9e-41
1.585714e-40
Interval from first to last insemination
9101.29
36
9e-41
1.585714e-40
Interval to first estrus after calving
5795.48703
36
9e-41
1.585714e-40
Luteal activity
17525.90571
36
9e-41
1.585714e-40
Male fertility
132.96576
36
4.866868e-13
5.808842e-13
Non-return rate
21639.233
36
9e-41
1.585714e-40
Number of degenerate embryos
102.38402
36
2.769764e-08
3.014155e-08
Number of embryos
360.92585
36
2.993443e-55
1.582248e-54
Number of transferable embryos
320.20531
36
2.756785e-47
1.133345e-46
Number of unfertilized ova
152.29851
36
2.976754e-16
3.933568e-16
Offspring number
2065.26584
36
9e-41
1.585714e-40
Ovulation rate
125.61478
36
7.446836e-12
8.610404e-12
Pregnancy loss
92.34227
36
7.63775e-07
7.849910e-07
Pregnancy rate
1409.14511
36
7.625839e-273
2.821560e-271
Reproductive efficiency
199.66063
36
1.447659e-24
1.983829e-24
Sexual precocity
2316.16069
36
9e-41
1.585714e-40
Stayability
136.68698
36
1.199873e-13
1.479843e-13
Stillbirth
3761.84998
36
9e-41
1.585714e-40
Total number of ova
240.5955
36
4.306757e-32
6.928261e-32
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
4014277.904540
Number of traits:
37
df
=
1044
Number of QTLs:
31,363
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
