Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk processing trait traits:
14
Number of QTL / associations found:
353
Number of chromosomes where QTL / associations are found:
24
Chi-squared (χ2) test: are milk processing trait traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
13.08944
23
0.950024
9.500240e-01
Chromosome 2
178.86848
23
4.246142e-26
1.698457e-25
Chromosome 3
109.14610
23
3.569069e-13
5.710510e-13
Chromosome 4
178.86848
23
4.246142e-26
1.698457e-25
Chromosome 5
72.18302
23
5.570872e-07
6.077315e-07
Chromosome 6
32679.57112
23
9e-41
1.080000e-39
Chromosome 7
89.71270
23
7.943088e-10
1.003337e-09
Chromosome 9
153.72406
23
2.549677e-21
6.119225e-21
Chromosome 11
2407.44644
23
9e-41
1.080000e-39
Chromosome 12
153.72406
23
2.549677e-21
6.119225e-21
Chromosome 13
130.48322
23
5.219893e-17
8.948388e-17
Chromosome 14
89.71270
23
7.943088e-10
1.003337e-09
Chromosome 15
89.71270
23
7.943088e-10
1.003337e-09
Chromosome 16
72.18302
23
5.570872e-07
6.077315e-07
Chromosome 17
153.72406
23
2.549677e-21
6.119225e-21
Chromosome 18
130.48322
23
5.219893e-17
8.948388e-17
Chromosome 19
13.08944
23
0.950024
9.500240e-01
Chromosome 20
130.48322
23
5.219893e-17
8.948388e-17
Chromosome 21
178.86848
23
4.246142e-26
1.698457e-25
Chromosome 22
89.71270
23
7.943088e-10
1.003337e-09
Chromosome 24
178.86848
23
4.246142e-26
1.698457e-25
Chromosome 26
130.48322
23
5.219893e-17
8.948388e-17
Chromosome 27
72.18302
23
5.570872e-07
6.077315e-07
Chromosome 28
153.72406
23
2.549677e-21
6.119225e-21
Chi-squared (χ2) test: Which of the 14 milk processing trait traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Cheese energy recovery
19.85157
13
0.09897363
1.154692e-01
Cheese fat recovery
28.30502
13
0.008203262
1.148457e-02
Cheese protein recovery
160.8812
13
1.307166e-27
1.830032e-26
Cheese solids recovery
7.11677
13
0.896034
8.960340e-01
Curd firming rate
39.98652
13
0.0001389278
2.778556e-04
Curd firmness
34.84077
13
0.0008956805
1.393281e-03
Curd solids yield
46.22131
13
1.306868e-05
3.659230e-05
Curd water yield
157.79166
13
5.514499e-27
3.860149e-26
Curd yield
23.13802
13
0.04004948
5.097207e-02
Milk color
139.2
13
3.043858e-23
1.420467e-22
Milk freezing point
69.6
13
9.509446e-10
3.328306e-09
Milk rennet coagulation time
38.44109
13
0.0002454161
4.294782e-04
Time to curd firmness
17.15643
13
0.1922513
2.070399e-01
Total coagulation time
44.81399
13
2.247630e-05
5.244470e-05
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
24
χ2
=
37650.045440
Number of traits:
14
df
=
299
Number of QTLs:
353
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
