Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of anatomy traits:
45
Number of QTL / associations found:
5,357
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are anatomy traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
7160.70060
29
9e-41
9.642857e-41
Chromosome 1
1018.28880
29
1.180128e-195
1.770192e-194
Chromosome 2
864.39690
29
3.393145e-163
3.393145e-162
Chromosome 3
2301.57450
29
9e-41
9.642857e-41
Chromosome 4
374.83155
29
9.079339e-62
6.809504e-61
Chromosome 5
1516.22055
29
1.894974e-301
5.684922e-300
Chromosome 6
1721214.41355
29
9e-41
9.642857e-41
Chromosome 7
176.08230
29
5.312162e-23
5.495340e-23
Chromosome 8
2548.70910
29
9e-41
9.642857e-41
Chromosome 9
3663.25065
29
9e-41
9.642857e-41
Chromosome 10
3193.24140
29
9e-41
9.642857e-41
Chromosome 11
3025.30410
29
9e-41
9.642857e-41
Chromosome 12
4428.74610
29
9e-41
9.642857e-41
Chromosome 13
3483.21690
29
9e-41
9.642857e-41
Chromosome 14
64633.35330
29
9e-41
9.642857e-41
Chromosome 15
4700.03985
29
9e-41
9.642857e-41
Chromosome 16
4700.03985
29
9e-41
9.642857e-41
Chromosome 17
4631.46030
29
9e-41
9.642857e-41
Chromosome 18
4230.56835
29
9e-41
9.642857e-41
Chromosome 19
3193.24140
29
9e-41
9.642857e-41
Chromosome 20
27.43200
29
0.5484098
5.484098e-01
Chromosome 21
5562.30600
29
9e-41
9.642857e-41
Chromosome 22
4036.92615
29
9e-41
9.642857e-41
Chromosome 23
5943.00420
29
9e-41
9.642857e-41
Chromosome 24
5943.00420
29
9e-41
9.642857e-41
Chromosome 25
6098.81175
29
9e-41
9.642857e-41
Chromosome 26
4165.51680
29
9e-41
9.642857e-41
Chromosome 27
6824.89350
29
9e-41
9.642857e-41
Chromosome 28
5637.43755
29
9e-41
9.642857e-41
Chromosome 29
4230.56835
29
9e-41
9.642857e-41
Chi-squared (χ2) test: Which of the 45 anatomy traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Biceps brachii weight
6.32347
44
1
1.000000e+00
Bone percentage
111.28977
44
9.509743e-08
2.139692e-07
Bone weight
310.21678
44
9.884628e-42
7.413471e-41
Carcass depth
128.70144
44
3.098417e-10
8.201692e-10
Carcass hind leg circumference
795.28613
44
1.623037e-138
3.651833e-137
Carcass length
230.49822
44
4.172084e-27
1.706762e-26
Carcass weight
298.00515
44
1.919366e-39
1.079643e-38
Foreshank weight
812.1538
44
5.476118e-142
2.464253e-140
Gastrointestinal tract percentage
43.64168
44
0.4868812
5.617860e-01
Gastrointestinal tract weight
60.90413
44
0.04635018
6.952527e-02
Head weight
69.93875
44
0.007684724
1.192457e-02
Heart percentage
381.64287
44
2.303842e-55
2.073458e-54
Heart weight
265.31774
44
2.139096e-33
1.069548e-32
Hindquarter percentage
73.8908
44
0.003177748
5.296247e-03
Hindquarter weight
108.32654
44
2.410825e-07
5.166054e-07
Hindshank weight
20.46128
44
0.9990675
1.000000e+00
Kidney weight
307.9905
44
2.589329e-41
1.664569e-40
Lean meat yield
727.07451
44
1.609621e-124
2.414432e-123
Liver percentage
84.09461
44
0.0002585063
4.846993e-04
Liver weight
26.34145
44
0.9839522
1.000000e+00
Longissimus muscle area
157.7296
44
1.017484e-14
3.270484e-14
Longissimus muscle area/muscle fiber area
43.64168
44
0.4868812
5.617860e-01
Longissimus muscle lean area
43.64168
44
0.4868812
5.617860e-01
Longissimus muscle length
203.21011
44
2.56777e-22
9.629137e-22
Longissimus muscle weight
82.6115
44
0.0003792769
6.826984e-04
Longissimus muscle width
56.7785
44
0.09366333
1.359629e-01
Lung percentage
30.01488
44
0.946671
1.000000e+00
Lung weight
93.64139
44
1.920332e-05
3.927952e-05
Meat percentage
179.87795
44
2.388903e-18
8.269280e-18
Meat weight
52.16285
44
0.1862972
2.619804e-01
Meat-to-bone ratio
71.02545
44
0.006060861
9.740669e-03
Muscle fiber area
43.64168
44
0.4868812
5.617860e-01
Muscle fiber diameter
136.7478
44
1.929631e-11
5.427087e-11
Pelvic area
136.98204
44
1.777902e-11
5.333706e-11
Pelvic width
381.64287
44
2.303842e-55
2.073458e-54
Quadriceps weight
31.76072
44
0.9157756
1.000000e+00
Rib thickness
76.38517
44
0.001771575
3.066188e-03
Semispinalis lean area
43.64168
44
0.4868812
5.617860e-01
Semitendinosus muscle weight
43.64168
44
0.4868812
5.617860e-01
Silverside weight
89.82748
44
5.569197e-05
1.089626e-04
Sirloin weight
250.44216
44
1.093856e-30
4.922352e-30
Spleen percentage
123.5814
44
1.741616e-09
4.124880e-09
Spleen weight
34.43194
44
0.8490696
9.552033e-01
Tenderloin weight
126.54763
44
6.431152e-10
1.607788e-09
Trapezius muscle lean area
43.64168
44
0.4868812
5.617860e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
1889527.580550
Number of traits:
45
df
=
1276
Number of QTLs:
5,357
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
