Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fatness traits:
19
Number of QTL / associations found:
3,857
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are fatness traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
1806.64844
29
9e-41
1.687500e-40
Chromosome 1
1208.59912
29
5.61396e-236
8.420940e-235
Chromosome 2
1262.64842
29
1.856487e-247
5.569461e-246
Chromosome 3
0.87495
29
0.998329325823115
9.983293e-01
Chromosome 4
19.31844
29
0.9128476
9.780510e-01
Chromosome 5
207.08195
29
8.575135e-29
1.353969e-28
Chromosome 6
8122.01797
29
9e-41
1.687500e-40
Chromosome 7
2179.21982
29
9e-41
1.687500e-40
Chromosome 8
186.94404
29
5.166605e-25
7.380864e-25
Chromosome 9
197.60418
29
5.244392e-27
7.866588e-27
Chromosome 10
166.51049
29
3.023194e-21
4.122537e-21
Chromosome 11
1769.80117
29
9e-41
1.687500e-40
Chromosome 12
3433.87988
29
9e-41
1.687500e-40
Chromosome 13
4.57938
29
0.998329325823115
9.983293e-01
Chromosome 14
539.73224
29
1.896129e-95
6.320430e-95
Chromosome 15
27.20021
29
0.5609041
6.232268e-01
Chromosome 16
50.94394
29
0.007132085
8.558502e-03
Chromosome 17
30.78646
29
0.3755598
4.333382e-01
Chromosome 18
147.25931
29
8.937151e-18
1.165715e-17
Chromosome 19
112.30368
29
9.61405e-12
1.201756e-11
Chromosome 20
243.20019
29
1.055617e-35
1.862854e-35
Chromosome 21
778.21492
29
4.27113e-145
3.203347e-144
Chromosome 22
219.81100
29
3.275248e-31
5.458747e-31
Chromosome 23
756.91440
29
1.240556e-140
7.443336e-140
Chromosome 24
694.78630
29
1.212977e-127
5.198473e-127
Chromosome 25
715.20009
29
6.612062e-132
3.306031e-131
Chromosome 26
424.04751
29
9.781412e-72
2.934424e-71
Chromosome 27
654.84545
29
2.575406e-119
9.657772e-119
Chromosome 28
1056.87500
29
8.140916e-204
8.140916e-203
Chromosome 29
334.37264
29
1.196650e-53
3.263591e-53
Chi-squared (χ2) test: Which of the 19 fatness traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Channel fat weight
16.45251
18
0.5609984
5.609984e-01
Fat area to ribeye area ratio
22.14601
18
0.2255672
2.857185e-01
Fat cover
75.92587
18
4.379983e-09
1.386995e-08
Fat percentage
45.75403
18
0.0003221935
7.652096e-04
Fat trim yield
43.59477
18
0.0006589934
1.391208e-03
Fat weight
57.70087
18
4.787265e-06
1.299400e-05
Intermuscular fat percentage
27.1726
18
0.0758146
1.234678e-01
Internal fat weight
27.05446
18
0.07797968
1.234678e-01
Intramuscular fat
152.20706
18
2.766208e-23
1.751932e-22
Kidney fat weight
92.22566
18
5.741276e-12
2.181685e-11
Kidney, pelvic, and heart fat percentage
95.27744
18
1.609472e-12
7.644992e-12
Kidney, pelvic, and heart fat weight
24.45782
18
0.1405936
1.908056e-01
Marbling score
200.39212
18
8.364263e-33
7.946050e-32
Meat fat content
20.50124
18
0.3053181
3.620309e-01
Pericardial fat weight
26.55002
18
0.08783092
1.283683e-01
Rib fat
33.21401
18
0.01572220
2.987218e-02
Sirloin fat depth
19.82118
18
0.3429766
3.620309e-01
Subcutaneous fat percentage
19.89262
18
0.3388975
3.620309e-01
Subcutaneous fat thickness
439.49406
18
5.140081e-82
9.766154e-81
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
27352.221590
Number of traits:
19
df
=
522
Number of QTLs:
3,857
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
