Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of limb traits traits:
19
Number of QTL / associations found:
3,091
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are limb traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
2698.40584
29
9e-41
1.687500e-40
Chromosome 1
1064.19684
29
2.296971e-205
3.445456e-204
Chromosome 2
309.48321
29
1.076857e-48
2.485055e-48
Chromosome 3
1.62298
29
0.998329325823115
9.983293e-01
Chromosome 4
144.91908
29
2.32792e-17
3.675663e-17
Chromosome 5
754.54187
29
3.894473e-140
1.947237e-139
Chromosome 6
479.01413
29
5.831977e-83
1.749593e-82
Chromosome 7
165.59716
29
4.436027e-21
7.393378e-21
Chromosome 8
115.56142
29
2.751095e-12
3.930136e-12
Chromosome 9
41.67612
29
0.06003377
7.830492e-02
Chromosome 10
89.52325
29
4.309631e-08
5.876770e-08
Chromosome 11
1955.10076
29
9e-41
1.687500e-40
Chromosome 12
310.49135
29
6.794825e-49
1.698706e-48
Chromosome 13
1806.14969
29
9e-41
1.687500e-40
Chromosome 14
22.17813
29
0.8127397
9.030441e-01
Chromosome 15
853.53111
29
6.547707e-161
6.547707e-160
Chromosome 16
31.32473
29
0.3502786
4.041676e-01
Chromosome 17
356.47002
29
4.492114e-58
1.225122e-57
Chromosome 18
2.99991
29
0.998329325823115
9.983293e-01
Chromosome 19
134.76434
29
1.423499e-15
2.135249e-15
Chromosome 20
2.90149
29
0.998329325823115
9.983293e-01
Chromosome 21
36.31603
29
0.1645385
1.974462e-01
Chromosome 22
226.32819
29
1.860589e-32
3.283392e-32
Chromosome 23
480.26813
29
3.226819e-83
1.075606e-82
Chromosome 24
642.64403
29
8.921344e-117
3.823433e-116
Chromosome 25
1066.06549
29
9.239521e-206
2.771856e-204
Chromosome 26
41.30714
29
0.06472546
8.090683e-02
Chromosome 27
480.26813
29
3.226819e-83
1.075606e-82
Chromosome 28
779.91618
29
1.878833e-145
1.127300e-144
Chromosome 29
828.62401
29
1.125607e-155
8.442053e-155
Chi-squared (χ2) test: Which of the 19 limb traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Digital cushion thickness
330.1107
18
2.980756e-59
5.663436e-58
Digital dermatitis
138.81365
18
1.083909e-20
5.148568e-20
Feet and leg conformation
44.91562
18
0.0004262024
5.398564e-04
Foot angle
38.97483
18
0.002871907
3.209778e-03
Foot diagonal
69.25001
18
6.050407e-08
8.211267e-08
Heel depth
35.31879
18
0.008616021
9.094689e-03
Heel horn erosion
100.38884
18
1.879824e-13
3.968517e-13
Hind leg conformation
40.93058
18
0.001556310
1.848118e-03
Hoof and leg disorders
160.18159
18
7.677227e-25
4.862244e-24
Hoof trimming status
87.3143
18
4.367327e-11
8.297921e-11
Interdigital dermatitis
117.54907
18
1.215603e-16
3.299494e-16
Interdigital hyperplasia
108.68844
18
5.519886e-15
1.310973e-14
Laminitis
28.53795
18
0.05432668
5.432668e-02
Rear leg placement - rear view
80.25821
18
7.722273e-10
1.128640e-09
Rear leg placement - side view
86.2998
18
6.621897e-11
1.143782e-10
Sole hemorrhage
125.03395
18
4.677681e-18
1.481266e-17
Sole ulcer
166.40826
18
4.611589e-26
4.381010e-25
Toe ulcer
132.5944
18
1.693545e-19
6.435471e-19
White line disease
85.60827
18
8.789061e-11
1.391601e-10
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
15922.190760
Number of traits:
19
df
=
522
Number of QTLs:
3,091
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
