Release 56
(Apr 24, 2025)

This linkage-map based data has been obsolete
(see Release notes 51, 52, 53). Information
provided here is only for retrospective online
support of publications that used this data.

QTL 11412 Description:

 Trait Information
Trait name: Teat pigmentation Vertebrate Trait Ontology: Skin pigmentation trait
Reported name: Teat pigmentation Product Trait Ontology: n/a
Symbol: TPIGMT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:22
QTL Peak Location:49.6 (cM)
QTL Span:36.28-36.48 (cM)
25.0-25.2 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:
Analysis type:QTL
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Significant
P_values<0.001
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #11412
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  •  QTL Experiment in Brief
    Animals:Animals were from a Holstein-Friesian x Jersey crossbred population.
     Breeds associated:
    Design:Animals were genotyped for 7,066 markers (SNPs and microsatellites) and analyzed for pigmentation traits.
    Analysis:A multimarker regression approach, including line-of-descent and half-sib analyses, was used.
    Software: 
    Notes: 
    Links:Edit

     Reference
    Authors:Liu, L; Harris, B; Keehan, M; Zhang, Y
    Affiliation:College of Animal Science and Technology, China Agricultural University, Beijing, 100093, China; changy@cau.edu.cn
    Title:Genome scan of pigmentation traits in Friesian-Jersey crossbred cattle.
    Journal:Journal of genetics and genomics (Yi chuan xue bao), 2009, 36(11): 661-6
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:White spotting on teat; interval rs29018735-rs29019972
    User inputs on reference #19932462
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  • Cite this Data:

    Animal QTLdb: QTL11412 was published in 2009, and was curated into QTLdb on 2010-03-29. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:11412

     

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