| QTL Map Information |
|---|
| Chromosome: | 22 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
3.1-3.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs137711821 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 8.62E-10 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Spanish Holstein cows. |
| Breeds associated:
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| Design: | Animals were genotyped using the EuroG MD BeadChip, with data imputed to HD then whole-genome sequence, and GWAS were performed for the presence or absence of bovine paratuberculosis lesions. A total of 13,881,067 SNSPs were used for analysis. |
| Analysis: | Mixed linear models were used. |
| Software: | GCTA 1.93.2, Eagle 2.4, minimac4 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Canive M, Badia-Bringué G, Vázquez P, González-Recio O, Fernández A, Garrido JM, Juste RA, Alonso-Hearn M |
| Affiliation: | Department of Animal Health, NEIKER-Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Derio, Bizkaia, Spain |
| Title: | Identification of loci associated with pathological outcomes in Holstein cattle infected with Mycobacterium avium subsp. paratuberculosis using whole-genome sequence data |
| Journal: | Scientific reports, 2021, 11(1): 20177 |
| Links: |
PubMed | Abstract | List all data
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