| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
117.2-118.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | - |
| Test base: | - |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.92% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nellore cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using varying SNP chips, with data imputed to the Illumina BovineHD panel, and GWAS were performed for reproductive traits and pre-weaning calf mortality. A total of 383,739 SNPs were used for analysis. |
| Analysis: | The single-step genomic best linear unbiased prediction (ssGBLUP) method via a univariate threshold animal model was used. |
| Software: | FImpute v.3, CMplot 44.3.0 |
| Notes: | |
| Reference |
|---|
| Authors: | Rodrigues GRD, Brito LF, Mota LFM, Cyrillo JNSG, Valente JPS, Benfica LF, Silva Neto JB, Borges MS, Monteiro FM, Faro LE, Albuquerque LG, Mercadante MEZ |
| Affiliation: | São Paulo State University, School of Agriculture and Veterinary Science, Jaboticabal, SP, 14884-900, Brazil |
| Title: | Genome-wide association studies and functional annotation of pre-weaning calf mortality and reproductive traits in Nellore cattle from experimental selection lines |
| Journal: | BMC genomics, 2024, 25(1): 1196 |
| Links: |
PubMed | Abstract | List all data
|
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