Release 56
(Apr 24, 2025)

QTL 315240 Description:

 Trait Information
Trait name: Teat placement Vertebrate Trait Ontology: Udder morphology trait
Trait details: teat spacing Product Trait Ontology: n/a
Symbol: TPL Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:3
QTL Peak Location:n/a
QTL Span:n/a
65.4-65.4 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs644320912
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:-
Test base:Comparison-wise
Threshold significance level:Significant
P_values2.4009E-8
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Saanen dairy goats.
     Breeds associated:
    Design:Goats were genotyped using low-coverage whole-genome sequencing, with data imputed to whole-genome level, and GWAS were performed for udder traits. A total of 14,717,075 imputed SNPs were used for analysis.
    Analysis:Mixed models were used.
    Software:R software v4.3.1, AIREMLF90, BLUPf90, GLIMPSE2, GEMMA
    Notes: 
    Links:Edit

     Reference
    Authors:Yao X, Li J, Fu J, Wang X, Ma L, Nanaei HA, Shah AM, Zhang Z, Bian P, Zhou S, Wang A, Wang X, Jiang Y
    Affiliation:Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
    Title:Genomic Landscape and Prediction of Udder Traits in Saanen Dairy Goats
    Journal:Animals : an open access journal from MDPI, 2025, 15(2):261
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #39858261
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  • Cite this Data:

    Animal QTLdb: QTL315240 was published in 2025, and was curated into QTLdb on 2025-04-01. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:315240

     

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