| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | 133.39 (cM) |
| QTL Span: | 133.39-133.39 (cM)
22.0-22.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs69021108 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.44E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Franches-Montagnes horses. |
| Breeds associated:
|
| Design: | Animals were initially genotyped using the Illumina equine SNP50 BeadChip and analyzed for extent of white markings. For subsequent fine mapping on ECA 3 and ECA16, 151 polymorphisms were genotyped. |
| Analysis: | A variance component model was used. |
| Software: | PLINK, EMMAX, GCTA, Haploview |
| Notes: | |
| Reference |
|---|
| Authors: | Haase B, Signer-Hasler H, Binns MM, Obexer-Ruff G, Hauswirth R, Bellone RR, Burger D, Rieder S, Wade CM, Leeb T |
| Affiliation: | Faculty of Veterinary Science, University of Sydney, Sydney, New South Wales, Australia ; Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland |
| Title: | Accumulating mutations in series of haplotypes at the KIT and MITF loci are major determinants of white markings in Franches-Montagnes horses |
| Journal: | PloS one, 2013, 8(9): e75071 |
| Links: |
PubMed | Abstract | List all data
|
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