Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fatness traits:
13
Number of QTL / associations found:
613
Number of chromosomes where QTL / associations are found:
28
Chi-squared (χ2) test: are fatness traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
131.70339
27
9.76164e-16
1.952328e-15
Chromosome 1
5147.62508
27
9e-41
5.040000e-40
Chromosome 2
955.17812
27
7.116161e-184
1.992525e-182
Chromosome 3
317.05414
27
2.858556e-51
2.000989e-50
Chromosome 4
345.09007
27
6.687159e-57
6.241348e-56
Chromosome 5
650.85514
27
7.212786e-120
1.009790e-118
Chromosome 6
8.99860
27
0.9995468
9.999954e-01
Chromosome 7
73.25643
27
3.803145e-06
6.264004e-06
Chromosome 8
10.01663
27
0.998785
9.999954e-01
Chromosome 9
70.45701
27
9.651062e-06
1.501276e-05
Chromosome 10
36.99215
27
0.09521408
1.211816e-01
Chromosome 11
58.11442
27
0.000463462
6.488468e-04
Chromosome 12
83.98728
27
9.26454e-08
1.621294e-07
Chromosome 13
14.21563
27
0.9790593
9.999954e-01
Chromosome 14
149.98399
27
5.173634e-19
1.207181e-18
Chromosome 15
5.73274
27
0.9999954
9.999954e-01
Chromosome 17
169.45214
27
1.378258e-22
3.859122e-22
Chromosome 18
131.70339
27
9.76164e-16
1.952328e-15
Chromosome 19
83.98728
27
9.26454e-08
1.621294e-07
Chromosome 20
58.11442
27
0.000463462
6.488468e-04
Chromosome 21
190.10797
27
1.864369e-26
6.525291e-26
Chromosome 22
211.95135
27
1.291796e-30
5.167184e-30
Chromosome 23
149.98399
27
5.173634e-19
1.207181e-18
Chromosome 24
211.95135
27
1.291796e-30
5.167184e-30
Chromosome 26
36.99215
27
0.09521408
1.211816e-01
Chromosome 27
10.01663
27
0.998785
9.999954e-01
Chromosome 28
20.62021
27
0.8037476
9.784753e-01
Chromosome 33
169.45214
27
1.378258e-22
3.859122e-22
Chi-squared (χ2) test: Which of the 13 fatness traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Abdominal fat percentage
32.90794
12
0.001000557
3.251810e-03
Abdominal fat weight
14.40799
12
0.2754168
3.254926e-01
Carcass fat content
33.55107
12
0.0007936657
3.251810e-03
Carcass fat content, dry matter basis
26.89453
12
0.008001881
2.080489e-02
Cingular fat width
23.91173
12
0.02091063
4.530636e-02
Fat distribution
12.03207
12
0.4431075
4.800331e-01
Intramuscular fat content
4.33042
12
0.9767093
9.767093e-01
Intramuscular fat percentage
77.57668
12
1.193756e-11
7.759414e-11
Skin fat weight
22.24227
12
0.03489257
6.480049e-02
Subcutaneous fat thickness
119.44184
12
7.984742e-20
1.038016e-18
Subcutaneous neck fat weight
18.44009
12
0.1029666
1.487295e-01
Total white fat weight
20.45787
12
0.05890537
9.572123e-02
Visceral fat weight
15.81751
12
0.1997381
2.596595e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
28
χ2
=
9503.593840
Number of traits:
13
df
=
324
Number of QTLs:
613
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
