| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
13.9-13.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs313754663 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Suggestive |
 |
P_values | <1 | | Dominance effect: | 0.371 |
| Additive effect: | -0.611 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from two Ethiopian indiginous chicken ecotypes, Jarso amd Horro. |
| Breeds associated:
n/a
|
| Design: | Bird were genotyped using the Affymetrix Axiom HD array and analyzed for immune, disease, and production traits. |
| Analysis: | GWAS analyses were performed using the GEMMA algorithm and a univariate linear mixed model. |
| Software: | PLINK, ASReml, GenABEL in R, fastPHASE, SweeD |
| Notes: | |
| Reference |
|---|
| Authors: | Psifidi A, Banos G, Matika O, Desta TT, Bettridge J, Hume DA, Dessie T, Christley R, Wigley P, Hanotte O, Kaiser P |
| Affiliation: | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK |
| Title: | Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes |
| Journal: | Genetics, Selection, Evolution : GSE, 2016, 48(1): 74 |
| Links: |
PubMed | Abstract | List all data
|
| Additional Information |
|---|
| Comments: | Jarso chickens |
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