| QTL Map Information |
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| Chromosome: | 2 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
9.1-9.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs317817698 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.004667 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PTPRN2 (protein tyrosine phosphatase, receptor type, N polypeptide 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Birds were from a resource family consisting of one backcross population and two F2 cross populations between a black rooster and Yukou Brown I hens. |
| Breeds associated:
n/a
|
| Design: | Birds were gentoyped using the Affymetrix 600K Axiom HD genotyping chicken array and analyzed for SNP association with eumelanin pigmentation (black plumage). A total of 422,723 SNPs were used for analysis. |
| Analysis: | A case/control association test was conducted. |
| Software: | PLINK, R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yang L, Du X, Wei S, Gu L, Li N, Gong Y, Li S |
| Affiliation: | Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei Province, 430070, China |
| Title: | Genome-wide association analysis identifies potential regulatory genes for eumelanin pigmentation in chicken plumage |
| Journal: | Animal genetics, 2017, 48(5):611-614 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | eumelanin pigmentation |
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