QTL Map Information |
Chromosome: | 3 |
QTL Peak Location: | n/a |
QTL Span: | n/a 26.7-26.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
Upper, "Significant": | n/a |
Peak: | rs316126786 |
Lower, "Significant": | n/a |
Lower, "Suggestive": | n/a |
Marker type: | SNP |
Analysis type: | Association |
Model tested: | Mendelian |
Test base: | n/a |
Threshold significance level: | Significant |
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P_values | 2.16E-6 | Dominance effect: | n/a |
Additive effect: | n/a |
Associated Gene: | EPAS1 (endothelial PAS domain protein 1) |
Cis/Trans acting type: |  |
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Extended information: |
(none) |
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QTL Experiment in Brief |
Animals: | Birds were Tibetan chickens and lowland chickens from seven Chinese native chicken breeds. |
Breeds associated:
n/a
|
Design: | Birds were genotyped for six SNPs in the EPAS1 gene and analyzed for altitude adaptation. |
Analysis: | Pearson's Chi-square test was used. |
Software: | Haploview, SPSS |
Notes: | |
Links: | Edit |
Reference |
Authors: | Li S, Li D, Zhao X, Wang Y, Yin H, Zhou L, Zhong C, Zhu Q |
Affiliation: | Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu, Sichuan Province, P. R. China |
Title: | A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken |
Journal: | PloS one, 2017, 12(2): e0172211 |
Links: |
PubMed | Abstract | List all data
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