Release 56
(Apr 24, 2025)

QTL 139845 Description:

 Trait Information
Trait name: Altitude adaptation Vertebrate Trait Ontology: n/a
Reported name: (n/a) Product Trait Ontology: n/a
Symbol: ALTAD Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:3
QTL Peak Location:n/a
QTL Span:n/a
26.7-26.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs316126786
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values2.16E-6
Dominance effect:n/a
Additive effect:n/a
Associated Gene:EPAS1 (endothelial PAS domain protein 1)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Birds were Tibetan chickens and lowland chickens from seven Chinese native chicken breeds.
     Breeds associated:
    n/a
    Design:Birds were genotyped for six SNPs in the EPAS1 gene and analyzed for altitude adaptation.
    Analysis:Pearson's Chi-square test was used.
    Software:Haploview, SPSS
    Notes: 
    Links:Edit

     Reference
    Authors:Li S, Li D, Zhao X, Wang Y, Yin H, Zhou L, Zhong C, Zhu Q
    Affiliation:Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu, Sichuan Province, P. R. China
    Title:A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken
    Journal:PloS one, 2017, 12(2): e0172211
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #28222154
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  • Cite this Data:

    Animal QTLdb: QTL139845 was published in 2017, and was curated into QTLdb on 2017-10-16. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:139845

     

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