| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
26.7-26.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs316126786 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 2.16E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | EPAS1 (endothelial PAS domain protein 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were Tibetan chickens and lowland chickens from seven Chinese native chicken breeds. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped for six SNPs in the EPAS1 gene and analyzed for altitude adaptation. |
| Analysis: | Pearson's Chi-square test was used. |
| Software: | Haploview, SPSS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li S, Li D, Zhao X, Wang Y, Yin H, Zhou L, Zhong C, Zhu Q |
| Affiliation: | Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu, Sichuan Province, P. R. China |
| Title: | A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken |
| Journal: | PloS one, 2017, 12(2): e0172211 |
| Links: |
PubMed | Abstract | List all data
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