| QTL Map Information |
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| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
79.9-80.3 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs15319469 |
| Peak: | |
| Lower, "Significant": | rs315727909 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
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P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Birds were from 3 commercial varieties of White Leghorn chickens. |
| Breeds associated:
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| Design: | Birds were genotyped using the Affymetrix Axiom 600K chicken panel and analyzed for susceptibility to avian influenza following natural infection. A total of 396,650 SNPs were used for analysis. |
| Analysis: | For GWAS, a logistic model was applied for joined analysis of all samples, with the first three multidimensional scaling (MDS) components used as covariates. A genome-wide scan with Fst was also performed. |
| Software: | PLINK, VCF tools v 0.1.12 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Drobik-Czwarno W, Wolc A, Fulton JE, Jankowski T, Arango J, O'Sullivan NP, Dekkers JCM |
| Affiliation: | Department of Animal Science, Iowa State University, Ames, IA 50011-3150, USA |
| Title: | Genetic basis of resistance to avian influenza in different commercial varieties of layer chickens. |
| Journal: | Poultry science, 2018, 97(10): 3421-3428 |
| Links: |
PubMed | Abstract | List all data
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