QTL Map Information |
Chromosome: | 1 |
QTL Peak Location: | n/a |
QTL Span: | n/a 43.1-43.1 (Mbp) |
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Upper, "Suggestive": | n/a |
Upper, "Significant": | rs733982629 |
Peak: | rs737683570 |
Lower, "Significant": | rs737683570 |
Lower, "Suggestive": | n/a |
Marker type: | SNP |
Analysis type: | QTL |
Model tested: | n/a |
Test base: | Experiment-wise |
Threshold significance level: | Significant |
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FDR | <0.05 | Dominance effect: | n/a |
Additive effect: | n/a |
Associated Gene: | KITLG (KIT ligand) |
Cis/Trans acting type: |  |
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Extended information: |
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QTL Experiment in Brief |
Animals: | Birds were purebred Rhode Island Red chickens. |
Breeds associated:
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Design: | Birds were subjected to whole-genome sequencing, and GWAS was performed for feather stripe pattern. A total of 1,186,700 SNPs and small INDELs were used for association analysis. |
Analysis: | A case-control model was used for GWAS. |
Software: | SAMtools v1.11, BCFtools v1.11, PLINK v1.90, qqman in R, snpEff v4.5, SPSS 21.0, VCFtools v0.1.16 |
Notes: | |
Links: | Edit |
Reference |
Authors: | Shen Q, Zhou J, Li J, Zhao X, Zheng L, Bao H, Wu C |
Affiliation: | National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China |
Title: | Genome-Wide Association Study Identifies Candidate Genes for Stripe Pattern Feather Color of Rhode Island Red Chicks |
Journal: | Genes, 2022, 13(9):1511 |
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PubMed | Abstract | List all data
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