| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
43.1-43.1 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs733982629 |
| Peak: | rs737683570 |
| Lower, "Significant": | rs737683570 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
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FDR | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | KITLG (KIT ligand) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were purebred Rhode Island Red chickens. |
| Breeds associated:
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| Design: | Birds were subjected to whole-genome sequencing, and GWAS was performed for feather stripe pattern. A total of 1,186,700 SNPs and small INDELs were used for association analysis. |
| Analysis: | A case-control model was used for GWAS. |
| Software: | SAMtools v1.11, BCFtools v1.11, PLINK v1.90, qqman in R, snpEff v4.5, SPSS 21.0, VCFtools v0.1.16 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Shen Q, Zhou J, Li J, Zhao X, Zheng L, Bao H, Wu C |
| Affiliation: | National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China |
| Title: | Genome-Wide Association Study Identifies Candidate Genes for Stripe Pattern Feather Color of Rhode Island Red Chicks |
| Journal: | Genes, 2022, 13(9):1511 |
| Links: |
PubMed | Abstract | List all data
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