Release 56
(Apr 24, 2025)

QTL 261824 Description:

 Trait Information
Trait name: Feather pigmentation Vertebrate Trait Ontology: Feather pigmentation trait
Reported name: feather stripe pattern Product Trait Ontology: n/a
Symbol: FPGMT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:1
QTL Peak Location:n/a
QTL Span:n/a
43.1-43.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":rs733982629
Peak:rs737683570
Lower, "Significant":rs737683570
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:QTL
Model tested:n/a
Test base:Experiment-wise
Threshold significance level:Significant
FDR<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:KITLG (KIT ligand)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Birds were purebred Rhode Island Red chickens.
     Breeds associated:
    Design:Birds were subjected to whole-genome sequencing, and GWAS was performed for feather stripe pattern. A total of 1,186,700 SNPs and small INDELs were used for association analysis.
    Analysis:A case-control model was used for GWAS.
    Software:SAMtools v1.11, BCFtools v1.11, PLINK v1.90, qqman in R, snpEff v4.5, SPSS 21.0, VCFtools v0.1.16
    Notes: 
    Links:Edit

     Reference
    Authors:Shen Q, Zhou J, Li J, Zhao X, Zheng L, Bao H, Wu C
    Affiliation:National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China
    Title:Genome-Wide Association Study Identifies Candidate Genes for Stripe Pattern Feather Color of Rhode Island Red Chicks
    Journal:Genes, 2022, 13(9):1511
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #36140679
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  • Cite this Data:

    Animal QTLdb: QTL261824 was published in 2022, and was curated into QTLdb on 2022-11-10. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:261824

     

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