| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
15.0-15.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs314777847 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.49E-08 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PLEKHA3 (pleckstrin homology domain containing A3) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #284885
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Birds were mature white-feathered broiler roosters from a resource population. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using a chicken 55K SNP array, with data imputed to full sequence, and GWAS was performed for semen volume. A total of 1,048,576 SNPs were used for analysis. |
| Analysis: | GWAS was performed using a univariate linear mixed model. |
| Software: | PLINK v1.9, SAS 9.1.3, ASReml v4.1, GEMMA v0.98.1, QQMAN in R, GENABEL in R, Beagle 5.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang GM, Liu PH, Chen L, Zheng JM, Zhao GP, Xing WH, Wen J, Li QH |
| Affiliation: | State Key Laboratory of Animal Nutrition, Key Laboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China |
| Title: | Genome-wide association study identifies variants associated with semen volume in white-feathered broilers |
| Journal: | Animal Genetics, 2023, 54(6):803-807 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #37705287
Add your comments
Note similar findings
Note contradictions
|
