Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk protein traits:
5
Number of QTL / associations found:
261
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are milk protein traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
22.98850
26
0.6335976
9.999288e-01
Chromosome 1
106.26435
26
1.140839e-11
1.540133e-10
Chromosome 2
78.67815
26
3.346157e-07
2.258656e-06
Chromosome 3
121.60920
26
2.589368e-14
6.991294e-13
Chromosome 4
0.22990
26
0.998329325823115
9.999288e-01
Chromosome 5
91.95400
26
2.690121e-09
2.421109e-08
Chromosome 6
55.22990
26
0.0007086897
3.826924e-03
Chromosome 7
2.81610
26
0.998329325823115
9.999288e-01
Chromosome 8
11.26435
26
0.994615
9.999288e-01
Chromosome 9
6.95400
26
0.9999288
9.999288e-01
Chromosome 10
6.95400
26
0.9999288
9.999288e-01
Chromosome 11
0.91955
26
0.998329325823115
9.999288e-01
Chromosome 12
22.98850
26
0.6335976
9.999288e-01
Chromosome 13
0.22990
26
0.998329325823115
9.999288e-01
Chromosome 14
6.95400
26
0.9999288
9.999288e-01
Chromosome 15
0.22990
26
0.998329325823115
9.999288e-01
Chromosome 16
35.91955
26
0.09315867
4.192140e-01
Chromosome 17
16.60920
26
0.9204148
9.999288e-01
Chromosome 18
22.98850
26
0.6335976
9.999288e-01
Chromosome 19
6.95400
26
0.9999288
9.999288e-01
Chromosome 20
6.95400
26
0.9999288
9.999288e-01
Chromosome 21
6.95400
26
0.9999288
9.999288e-01
Chromosome 22
22.98850
26
0.6335976
9.999288e-01
Chromosome 23
22.98850
26
0.6335976
9.999288e-01
Chromosome 24
1.43680
26
0.998329325823115
9.999288e-01
Chromosome 25
6.95400
26
0.9999288
9.999288e-01
Chromosome 26
11.26435
26
0.994615
9.999288e-01
Chi-squared (χ2) test: Which of the 5 milk protein traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Milk casein percentage
45.0682
4
3.848241e-09
9.620602e-09
Milk protein content
95.4293
4
9.235287e-20
4.617643e-19
Milk protein percentage
18.21893
4
0.001118247
1.118247e-03
Milk protein persistency
31.625
4
2.282185e-06
3.803642e-06
Milk protein yield
25.48368
4
4.021e-05
5.026250e-05
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
698.275700
Number of traits:
5
df
=
104
Number of QTLs:
261
p-value
=
8.747612e-89
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
