Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of meat texture traits:
5
Number of QTL / associations found:
28
Number of chromosomes where QTL / associations are found:
6
Chi-squared (χ2) test: are meat texture traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 2
190.47620
5
3.090442e-39
1.854265e-38
Chromosome 3
7.61905
5
0.178518
2.142216e-01
Chromosome 12
14.40475
5
0.01323285
3.969855e-02
Chromosome 15
7.61905
5
0.178518
2.142216e-01
Chromosome 18
7.61905
5
0.178518
2.142216e-01
Chromosome 21
2.97620
5
0.7036553
7.036553e-01
Chi-squared (χ2) test: Which of the 5 meat texture traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Meat tenderness, tenderometer
13
4
0.01127579
0.05637895
Myosin isoform type I content
2.22221
4
0.6949652
0.69496520
Myosin isoform type IIa content
2.22221
4
0.6949652
0.69496520
Myosin isoform type IIb content
2.22221
4
0.6949652
0.69496520
Shear force
4.59999
4
0.3308553
0.69496520
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
6
χ2
=
230.714300
Number of traits:
5
df
=
20
Number of QTLs:
28
p-value
=
8.602074e-38
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
