Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of offspring traits traits:
2
Number of QTL / associations found:
285
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are offspring traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
104.14270
26
2.601771e-11
7.024782e-10
Chromosome 1
7.86900
26
0.9997656
9.999876e-01
Chromosome 2
13.51112
26
0.9788962
9.999876e-01
Chromosome 3
39.53216
26
0.0433327
3.899943e-01
Chromosome 4
0.05848
26
0.998329325823115
9.999876e-01
Chromosome 5
64.45848
26
4.101479e-05
5.536997e-04
Chromosome 6
13.51112
26
0.9788962
9.999876e-01
Chromosome 7
0.39532
26
0.998329325823115
9.999876e-01
Chromosome 8
0.39532
26
0.998329325823115
9.999876e-01
Chromosome 9
13.86900
26
0.974686
9.999876e-01
Chromosome 10
1.13216
26
0.998329325823115
9.999876e-01
Chromosome 11
0.03742
26
0.998329325823115
9.999876e-01
Chromosome 12
2.39532
26
0.998329325823115
9.999876e-01
Chromosome 13
13.86900
26
0.974686
9.999876e-01
Chromosome 14
0.03742
26
0.998329325823115
9.999876e-01
Chromosome 15
0.03742
26
0.998329325823115
9.999876e-01
Chromosome 16
5.84796
26
0.9999876
9.999876e-01
Chromosome 17
5.84796
26
0.9999876
9.999876e-01
Chromosome 18
13.86900
26
0.974686
9.999876e-01
Chromosome 19
10.81638
26
0.9961176
9.999876e-01
Chromosome 20
0.45848
26
0.998329325823115
9.999876e-01
Chromosome 21
0.45848
26
0.998329325823115
9.999876e-01
Chromosome 22
17.30058
26
0.8997213
9.999876e-01
Chromosome 23
13.86900
26
0.974686
9.999876e-01
Chromosome 24
13.86900
26
0.974686
9.999876e-01
Chromosome 25
1.23742
26
0.998329325823115
9.999876e-01
Chromosome 26
5.84796
26
0.9999876
9.999876e-01
Chi-squared (χ2) test: Which of the 2 offspring traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Litter weight, total
72.12731
1
2.017522e-17
4.035044e-17
Offspring number
2.62282
1
0.1053371
1.053371e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
364.673660
Number of traits:
2
df
=
26
Number of QTLs:
285
p-value
=
1.957335e-61
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
