| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
101.2-101.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs159641295 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Sarda dairy sheep. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina OvineSNP50 BeadChip, and GWAS was performed for fecal egg count as a proxy for gastrointestinal nematode resistance. A total of 43,390 SNPs were used for analysis. |
| Analysis: | Combined linkage disequilibrium/linkage analysis was used to detect QTL. |
| Software: | SAMtools, v1.6, GATK v4.011.0, ASReml-R 4.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Casu S, Usai MG, Sechi T, Salaris SL, Miari S, Mulas G, Tamponi C, Varcasia A, Scala A, Carta A. |
| Affiliation: | Genetics and Biotechnology - Agris Sardegna, Olmedo, Italy |
| Title: | Association analysis and functional annotation of imputed sequence data within genomic regions influencing resistance to gastro-intestinal parasites detected by an LDLA approach in a nucleus flock of Sarda dairy sheep |
| Journal: | Genetics, Selection, Evolution : GSE, 2022, 54(1): 2 |
| Links: |
PubMed | Abstract | List all data
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