| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
48.8-48.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs119102842 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
FDR | 0.04 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | TLR9 (toll like receptor 9) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Qizil sheep. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped for 157 SNPs in candidate genes involved in immune pathways, and association analysis was performed for fecal egg count. |
| Analysis: | Three single-locus methods (general linear model [GLM], mixed linear model [LM], and settlement of MLM under progressively exclusive relationship [SUPER]) and three multiple-loci methods (multiple loci MLM [MLMM], fixed and random circulating probability unification [FarmCPU], and Bayesian-information and linkage-disequilibrium iteratively nested keyway [Blink]) were used. |
| Software: | GAPIT |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Rafat S A, Barbato M, Hajializadeh Valilou R, Moghaddam G H, Nematollahi A, Periasamy K, Pichler R, Ajmone Marsan P |
| Affiliation: | Department of Animal Science, Faculty of Agricultural Sciences, University of Tabriz, Tabriz, Iran |
| Title: | Identification of genomic regions associated with resistance to gastrointestinal parasites in an indigenous sheep by single- and multiple-locus methods |
| Journal: | Animal Genetics, 2024, 55(2):286-290 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | method: MLMM |
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