| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 50.37-50.37 (cM)
37.3-37.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs427299969 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 4.90E-7 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Manchega and Rasa Aragonesa sheep. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina OvineSNP50 Beadchip and analyzed for coat pigmentation. A total of 49,034 SNPs were used for analysis. |
| Analysis: | A chi-square test for association and a permutation tree-based random forest analysis were used. |
| Software: | PLINK, GenABEL in R, RandomForest in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Kijas J W, Serrano M, McCulloch R, Li Y, Salces Ortiz J, Calvo J H, Pérez-Guzmán M D |
| Affiliation: | CSIRO Animal, Food and Health Sciences, Brisbane, QLD, Australia |
| Title: | Genomewide association for a dominant pigmentation gene in sheep |
| Journal: | Journal of animal breeding and genetics , 2013, 130(6): 468-75 |
| Links: |
PubMed | Abstract | List all data
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