| QTL Map Information |
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| Chromosome: | 17 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs367441111 |
| Peak: | |
| Lower, "Significant": | rs367474029 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.38% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Rainbow trout were from two populations: the NCCCWA odd-year line, selected for improved resistance to BCWD; and the Troutlodge, Inc. May-spawning, odd-year nucleus breeding population, selected for growth-related traits. |
| Breeds associated:
n/a
|
| Design: | Fish were genotyped using the Affymetrix Axiom 57K SNP array and analyzed for resistance to columnaris disease. A total of 35,900 and 33,980 SNPs were used in the NCCCWA and TLUM populations, respectively. |
| Analysis: | A weighted single-step genomic BLUP (wssGBLUP) method was used. |
| Software: | THRGIBBSF90, POSTGSF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Silva RMO, Evenhuis JP, Vallejo RL, Gao G, Martin KE, Leeds TD, Palti Y, Lourenco DAL |
| Affiliation: | National Center for Cool and Cold Water Aquaculture, Agricultural Research Service, United States Department of Agriculture, 11861 Leetown Road, Leetown, WV, 25430, USA |
| Title: | Whole-genome mapping of quantitative trait loci and accuracy of genomic predictions for resistance to columnaris disease in two rainbow trout breeding populations |
| Journal: | Genetics, Selection, Evolution : GSE, 2019, 51(1): 42 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | NCCCWA population |
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