Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
34
Number of QTL / associations found:
4,448
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
5873.73868
18
9e-41
1.221429e-40
Chromosome 1
12974.90762
18
9e-41
1.221429e-40
Chromosome 2
168.93138
18
1.470874e-26
1.863107e-26
Chromosome 3
7150.91706
18
9e-41
1.221429e-40
Chromosome 4
2721.70612
18
9e-41
1.221429e-40
Chromosome 5
7.33210
18
0.987014
9.870140e-01
Chromosome 6
254.90990
18
8.170808e-44
2.587423e-43
Chromosome 7
10815.78522
18
9e-41
1.221429e-40
Chromosome 8
123.03002
18
1.122126e-17
1.254141e-17
Chromosome 9
1153.11986
18
1.231676e-233
1.170092e-232
Chromosome 10
2383.42618
18
9e-41
1.221429e-40
Chromosome 11
42.49388
18
0.000943041
9.954322e-04
Chromosome 12
979.06094
18
2.086779e-196
1.321627e-195
Chromosome 13
574.50820
18
2.08911e-110
7.938618e-110
Chromosome 14
159.17032
18
1.210855e-24
1.437890e-24
Chromosome 15
713.78750
18
6.723914e-140
3.193859e-139
Chromosome 16
1924.23510
18
9e-41
1.221429e-40
Chromosome 17
1205.46524
18
7.54778e-245
1.434078e-243
Chromosome 18
2770.05378
18
9e-41
1.221429e-40
Chi-squared (χ2) test: Which of the 34 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
50.0288
33
0.02903898
5.807796e-02
Average daily gain
189.19493
33
8.025668e-24
3.898182e-23
Average daily ham weight gain
10.98921
33
0.999888
9.999984e-01
Average daily lean meat gain
40.96226
33
0.160738
2.732546e-01
Average daily loin weight gain
10.98921
33
0.999888
9.999984e-01
Body circumference
707.23687
33
1.706067e-127
2.900314e-126
Body depth
38.90183
33
0.2211827
3.581053e-01
Body height
421.765
33
5.692926e-69
6.451983e-68
Body length
1281.55812
33
3.255510e-248
1.106873e-246
Body weight
107.6746
33
7.56105e-10
2.570757e-09
Body weight linear
7.77317
33
0.9999984
9.999984e-01
Body width
26.24691
33
0.7916608
9.999984e-01
Bone mineral content
45.50638
33
0.07228397
1.293503e-01
Bone mineral density
49.30209
33
0.03386517
6.396754e-02
Chest width
53.55197
33
0.01329258
2.824673e-02
Days to 100 kg
132.2722
33
7.808583e-14
2.949909e-13
Days to 105 kg
65.95724
33
0.0005656414
1.435745e-03
Days to 110 kg
69.70455
33
0.0001966010
5.570362e-04
Days to 113 kg
15.11593
33
0.996742
9.999984e-01
Days to 115 kg
28.24739
33
0.7028146
9.956540e-01
Days to 30 kg
23.13532
33
0.899309
9.999984e-01
Days to 90 kg
29.81761
33
0.6263586
9.259214e-01
Femur bone mineral density
14.24349
33
0.9981818
9.999984e-01
Femur length
193.71354
33
1.202917e-24
6.816530e-24
Hip bone length
93.27811
33
1.160088e-07
3.585727e-07
Humerus length
227.52275
33
6.452774e-31
4.387886e-30
Lipid accretion rate
65.79723
33
0.0005911893
1.435745e-03
Loin eye area linear
27.1613
33
0.752579
9.999984e-01
Physis score
8.12876
33
0.999997
9.999984e-01
Protein accretion rate
19.19908
33
0.9733689
9.999984e-01
Rump width
37.40138
33
0.274017
4.234808e-01
Scapula length
64.42116
33
0.0008615072
1.952750e-03
Tibia length
261.11866
33
2.710481e-37
2.303909e-36
Ulna length
172.24612
33
9.14711e-21
3.887522e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
51996.579100
Number of traits:
34
df
=
594
Number of QTLs:
4,448
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
