| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 110.87 (cM) |
| QTL Span: | 108.91-112.83 (cM)
138.7-143.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.77 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Danish Landrace and Yorkshire pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip, or data imputed from the 8.5K low-density chip, and analyzed for litter size and piglet mortality traits. A total of 37,060 and 36,058 SNPs were used for analysis in Landrace and Yorkshire, respectively. |
| Analysis: | A linear mixed model and a Bayesian mixture model were used for GWAS. |
| Software: | DMU, BayZ, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Guo X, Su G, Christensen OF, Janss L, Lund MS |
| Affiliation: | Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark |
| Title: | Genome-wide association analyses using a Bayesian approach for litter size and piglet mortality in Danish Landrace and Yorkshire pigs |
| Journal: | BMC genomics, 2016, 17(1): 468 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Mortality rate before day 5 |
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