| QTL Map Information |
|---|
| Chromosome: | 17 |
| QTL Peak Location: | 30.18 (cM) |
| QTL Span: | 29.47-30.89 (cM)
17.8-18.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs80915581 |
| Peak: | |
| Lower, "Significant": | rs80979466 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Suggestive |
 |
VARIANCE | 0.33 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were commercial pigs from a three-way cross consisting of a Duroc sire line crossed with an F1 female (Landrace x Large White). |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 v2 Beadchip and analyzed for peak shear force and other meat quality traits. A total of 42,721 SNPs were used for analysis. A subpopulation was further analyzed using SNPs in CAST. |
| Analysis: | A Bayes B method and a multi-marker association model were used. |
| Software: | PLINK, SAS, Haploview, GenSel, ASReml |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang C, Bruce H, Yang T, Charagu P, Kemp RA, Boddicker N, Miar Y, Wang Z, Plastow G |
| Affiliation: | Department of Agricultural, Food and Nutritional Sciences, University of Alberta, Edmonton, AB, Canada |
| Title: | Genome Wide Association Studies (GWAS) Identify QTL on SSC2 and SSC17 Affecting Loin Peak Shear Force in Crossbred Commercial Pigs |
| Journal: | PloS one, 2016, 11(2): e0145082 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Combined data (population 1 & 2) |
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