| QTL Map Information |
|---|
| Chromosome: | 10 |
| QTL Peak Location: | 17.19 (cM) |
| QTL Span: | 17.10-17.27 (cM)
7.4-7.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs81428570 |
| Peak: | |
| Lower, "Significant": | rs81428608 |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.0016 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #121894
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were from a three-generation Large White x Min resource population. |
| Breeds associated:
|
| Design: | Animals were genoytped using the Illumina PorcineSNP60 BeadChip; SNPs and identified CNVs were analyzed for association with meat quality traits. |
| Analysis: | Principal component analysis (PCA) corrected association testing and GRAMMAR-GC method were used. |
| Software: | DMU, Golden Helix SVS, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wang L, Xu L, Liu X, Zhang T, Li N, Hay EH, Zhang Y, Yan H, Zhao K, Liu GE, Zhang L, Wang L |
| Affiliation: | Key Laboratory of Farm Animal Genetic Resources and Germplasm Innovation of Ministry of Agriculture of China, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China |
| Title: | Copy number variation-based genome wide association study reveals additional variants contributing to meat quality in Swine |
| Journal: | Scientific reports, 2015, 5: 12535 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #26234186
Add your comments
Note similar findings
Note contradictions
|
