| QTL Map Information |
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| Chromosome: | 4 |
| QTL Peak Location: | 82.82 (cM) |
| QTL Span: | 82.82-82.82 (cM)
90.2-90.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs319820488 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | COPA (coatomer protein complex subunit alpha) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from an (Iberian x Landrace) x Landrace backcross (IBMAP population). |
| Breeds associated:
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| Design: | Using RNA-Seq, SNPs were identified for use in association analyses with growth, fatness, and cut yield traits. A total of 19 SNPs were used for analysis. |
| Analysis: | A univariate animal model was used for association analysis. |
| Software: | QXPAK 5.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Martínez-Montes AM, Fernández A, Pérez-Montarelo D, Alves E, Benítez RM, Nuñez Y, Óvilo C, Ibañez-Escriche N, Folch JM, Fernández AI |
| Affiliation: | Mejora Genética Animal, Instituto Nacional de Tecnología Agraria y Alimentaria, Ctra. de la Coruña km. 7.5, 28040, Madrid, Spain |
| Title: | Using RNA-Seq SNP data to reveal potential causal mutations related to pig production traits and RNA editing |
| Journal: | Animal genetics, 2017, 48(2):151-165 |
| Links: |
PubMed | Abstract | List all data
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