| QTL Map Information |
|---|
| Chromosome: | 12 |
| QTL Peak Location: | 124.49 (cM) |
| QTL Span: | 124.49-124.50 (cM)
57.0-57.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81437766 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Suggestive |
 |
VARIANCE | 3.45% | | P_values | 0.069 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were pregnant purebred Landrace gilts. |
| Breeds associated:
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| Design: | Gilts were inoculated with PRRSV and euthanized 21 dpi. Fetuses were genotyped using the Illumina PorcineSNP60 BeadChip v2 and analyzed for preservation status (viable, meconium-stained, decomposed, autolysed, or mummified). A total of 45,255 SNPs were used for analysis. |
| Analysis: | A generalized linear model was used. |
| Software: | R/rrBLUP, R/glmnet, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yang T, Wilkinson J, Wang Z, Ladinig A, Harding J, Plastow G |
| Affiliation: | Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada |
| Title: | A genome-wide association study of fetal response to type 2 porcine reproductive and respiratory syndrome virus challenge |
| Journal: | Scientific reports, 2016, 6: 20305 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | viral load in fetal thymus |
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