QTL Map Information |
Chromosome: | 12 |
QTL Peak Location: | 124.49 (cM) |
QTL Span: | 124.49-124.50 (cM) 57.0-57.0 (Mbp) |
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Upper, "Suggestive": | n/a |
Upper, "Significant": | n/a |
Peak: | rs81437766 |
Lower, "Significant": | n/a |
Lower, "Suggestive": | n/a |
Marker type: | SNP |
Analysis type: | Association |
Model tested: | Mendelian |
Test base: | Experiment-wise |
Threshold significance level: | Suggestive |
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VARIANCE | 3.45% | P_values | 0.069 | Dominance effect: | n/a |
Additive effect: | n/a |
Associated Gene: | n/a |
Cis/Trans acting type: |  |
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Extended information: |
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QTL Experiment in Brief |
Animals: | Animals were pregnant purebred Landrace gilts. |
Breeds associated:
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Design: | Gilts were inoculated with PRRSV and euthanized 21 dpi. Fetuses were genotyped using the Illumina PorcineSNP60 BeadChip v2 and analyzed for preservation status (viable, meconium-stained, decomposed, autolysed, or mummified). A total of 45,255 SNPs were used for analysis. |
Analysis: | A generalized linear model was used. |
Software: | R/rrBLUP, R/glmnet, PLINK |
Notes: | |
Links: | Edit |
Reference |
Authors: | Yang T, Wilkinson J, Wang Z, Ladinig A, Harding J, Plastow G |
Affiliation: | Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada |
Title: | A genome-wide association study of fetal response to type 2 porcine reproductive and respiratory syndrome virus challenge |
Journal: | Scientific reports, 2016, 6: 20305 |
Links: |
PubMed | Abstract | List all data
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Additional Information |
Comments: | viral load in fetal thymus |

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