Release 56
(Apr 24, 2025)

QTL 125046 Description:

 Trait Information
Trait name: PRRS viral load Vertebrate Trait Ontology: Response to viral infection trait
Reported name: (n/a) Product Trait Ontology: n/a
Symbol: PRRSVL Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:12
QTL Peak Location:124.49 (cM)
QTL Span:124.49-124.50 (cM)
57.0-57.0 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs81437766
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Experiment-wise
Threshold significance level:Suggestive
VARIANCE3.45%
P_values0.069
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were pregnant purebred Landrace gilts.
     Breeds associated:
    Design:Gilts were inoculated with PRRSV and euthanized 21 dpi. Fetuses were genotyped using the Illumina PorcineSNP60 BeadChip v2 and analyzed for preservation status (viable, meconium-stained, decomposed, autolysed, or mummified). A total of 45,255 SNPs were used for analysis.
    Analysis:A generalized linear model was used.
    Software:R/rrBLUP, R/glmnet, PLINK
    Notes: 
    Links:Edit

     Reference
    Authors:Yang T, Wilkinson J, Wang Z, Ladinig A, Harding J, Plastow G
    Affiliation:Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada
    Title:A genome-wide association study of fetal response to type 2 porcine reproductive and respiratory syndrome virus challenge
    Journal:Scientific reports, 2016, 6: 20305
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:viral load in fetal thymus
    User inputs on reference #26846722
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  • Cite this Data:

    Animal QTLdb: QTL125046 was published in 2016, and was curated into QTLdb on 2017-01-26. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:125046

     

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