| QTL Map Information |
|---|
| Chromosome: | 12 |
| QTL Peak Location: | 89.07 (cM) |
| QTL Span: | 89.07-89.07 (cM)
42.9-42.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81268186 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were gilts from a Large White line or a Large White x Landrace cross. |
| Breeds associated:
|
| Design: | Animals were genotyped for 64,232 SNPs using the Porcine 60K BeadChip and analyzed for backfat, loin muscle area, body conformation, and feet and leg structural soundness traits. In total, 51,385 SNPs were used in the analysis. |
| Analysis: | SNPs were jointly fitted using Bayesian techniques as random effects in a mixture model that assumed a known large proportion of SNPs had zero effect. |
| Software: | GenSel, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Fan B, Onteru SK, Du ZQ, Garrick DJ, Stalder KJ, Rothschild MF |
| Affiliation: | Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, Iowa, United States of America |
| Title: | Genome-wide association study identifies Loci for body composition and structural soundness traits in pigs. |
| Journal: | PloS One, 2011, 6(2): e14726 |
| Links: |
PubMed | Abstract | List all data
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