| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
30.8-30.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80845355 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.50E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #172677
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were from two populations of Duroc pigs, of either American of Canadian origin. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Geneseek Porcine 50K SNP chip and analyzed for loin muscle area and loin muscle depth. Single-trait GWAS in the American and Canadian populations was carried out using 38,790 or 35,845 SNPs, respectively. A meta-analysis across the populations used 40,030 SNPs. |
| Analysis: | Univariate linear mixed models were used. |
| Software: | GEMMA, GCTA, METAL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhuang Z, Li S, Ding R, Yang M, Zheng E, Yang H, Gu T, Xu Z, Cai G, Wu Z, Yang J |
| Affiliation: | College of Animal Science and National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangdong, P.R. China |
| Title: | Meta-analysis of genome-wide association studies for loin muscle area and loin muscle depth in two Duroc pig populations |
| Journal: | PloS one, 2019, 14(6): e0218263 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | meta-analysis |
User inputs on reference #31188900
Add your comments
Note similar findings
Note contradictions
|
