| QTL Map Information |
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| Chromosome: | 3 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
11.5-11.5 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs329147631 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 2.08% | | P_values | 1.00E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were 1,490 Duroc boars. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for intramuscular fat. A total of 38,753 SNPs were used for analysis. |
| Analysis: | SIngle-locus and multi-locus GWAS were performed using mixed linear models. |
| Software: | PLINK, GEMMA, GCTA, mrMLM in R, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ding R, Yang M, Quan J, Li S, Zhuang Z, Zhou S, Zheng E, Hong L, Li Z, Cai G, Huang W, Wu Z, Yang J |
| Affiliation: | College of Animal Science and National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangdong, China |
| Title: | Single-Locus and Multi-Locus Genome-Wide Association Studies for Intramuscular Fat in Duroc Pigs |
| Journal: | Frontiers in genetics, 2019, 10: 619 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | single-locus GWAS |
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