| QTL Map Information |
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| Chromosome: | 8 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
124.1-124.2 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs336507639 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 5.07E-15 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were from a four-generation resource population developed from the intercross of White Duroc boars with Chinese Erhualian sows. Male F3 pigs were used in the study. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip or GeneSeek GGP Porcine 50K BeadChip, with data imputed to whole-genome sequence, and analyzed for scrotal hernia. a total of 18,756,626 SNPs were used for analysis. |
| Analysis: | Linear mixed models were used for GWAS. |
| Software: | PLINK, Beagle, GEMMA, fastPHASE |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Xu W, Chen D, Yan G, Xiao S, Huang T, Zhang Z, Huang L |
| Affiliation: | State Key Laboratory for Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, China |
| Title: | Rediscover and Refine QTLs for Pig Scrotal Hernia by Increasing a Specially Designed F3 Population and Using Whole-Genome Sequence Imputation Technology |
| Journal: | Frontiers in genetics, 2019, 10: 890 |
| Links: |
PubMed | Abstract | List all data
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