| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
82.1-82.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81290321 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.69E-7 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Danish Landrace and Danish Yorkshire pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the GeneSeek Porcine 50K SNP chip and analyzed for bone mineral density. A total of 39,499 (Landrace) or 42,391 (Yorkshire) SNPs were used for analysis. |
| Analysis: | GWAS was performed using the MLMA-LOCO (leaving one chromosome out) algorithm. Both populations were analyzed separately, then a meta-analysis was performed. |
| Software: | GCTA, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Nan JH, Yin LL, Tang ZS, Xiang T, Ma GJ, Li XY, Liu XL, Zhao SH, Liu XD |
| Affiliation: | Key Lab of Swine Healthy Breeding of Ministry of Agriculture and Rural Affairs, Guangxi Yangxiang Co., Ltd., Guigang, Guangxi, P.R. China |
| Title: | Identification of novel variants and candidate genes associated with porcine bone mineral density using genome-wide association study |
| Journal: | Journal of animal science, 2020, 98(4):skaa052 |
| Links: |
PubMed | Abstract | List all data
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