| QTL Map Information |
|---|
| Chromosome: | 9 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
127.9-127.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs339948501 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were pigs sired by either Landrace or Yorkshire boars and produced out of Landrace-Yorkshire cross sows. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the NeoGen Porcine GGPHD chip, Illumina PorcineSNP60 v2 chip, or NeoGen GGP-Porcine chip and analyzed for feed efficiency. |
| Analysis: | Weighted and unweighted GWAS were performed. RNA-seq was used to assign SNP weights. |
| Software: | WOMBAT |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Keel BN, Snelling WM, Lindholm-Perry AK, Oliver WT, Kuehn LA, Rohrer GA |
| Affiliation: | USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States |
| Title: | Using SNP Weights Derived From Gene Expression Modules to Improve GWAS Power for Feed Efficiency in Pigs. |
| Journal: | Front Genet, 2020, 10:1339 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Module III; weighted GWAS |
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