| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 160.12 (cM) |
| QTL Span: | 180 - 199 (cM)
145.8-155.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.006 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | A single large family of 4 F0 Duroc sires and 16 F0 Pietrain dams (F0), 56 F1 and 954 F2 animals from Michigan State University pig resource population.
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| Breeds associated:
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| Design: | A whole genome expression microarray and an F2 pig resource population to
conduct a global eQTL analysis in loin muscle tissue, and compared results to previously inferred phenotypic QTL (pQTL) on the same population. |
| Analysis: | Linear mixed model was fit to normalized log intensity data on an oligonucleotide-by-oligonucleotide basis comparing eQTL to previously published pQTL. Given a particular eQTL region, delimited by a 5 cM interval to each side of the peak, we computed a p-value for observing (by chance) an overlap as long as the one observed in each eQTL/pQTL region. |
| Software: | |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Steibel Juan Pedro, Bates Ronald O, Rosa Guilherme J M, Tempelman Robert J, Rilington Valencia D, Ragavendran Ashok, Raney Nancy E, Ramos Antonio Marcos, Cardoso Fernando F, Edwards David B, Ernst Catherine W, |
| Affiliation: | Department of Animal Science, Michigan State University, East Lansing, Michigan, United States of America. |
| Title: | Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs. |
| Journal: | PloS one, 2011, 6 (2): e16766 |
| Links: |
PubMed | Abstract | List all data
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