| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
9.4-9.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs335646937 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 6.28E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PHACTR1 (phosphatase and actin regulator 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Landrace, Yorkshire, Landrace and Yorkshire hybrid, and Duroc x Landrace x Yorkshire hybrid pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the custom CC1 PorcineSNP50 BeadChip and GWAS was performed for intramuscular fat content. A total of 40,016 SNPs were used for analysis. |
| Analysis: | A linear mixed model was used. |
| Software: | R software, GEMMA, GCTA, DMU |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Xie L, Qin J, Rao L, Tang X, Cui D, Chen L, Xu W, Xiao S, Zhang Z, Huang L |
| Affiliation: | National Key Laboratory for Swine Genetic Improvement and Production Technology, Ministry of Science and Technology of China, Jiangxi Agricultural University, Nanchang, Jiangxi Province, 330045, China |
| Title: | Accurate prediction and genome-wide association analysis of digital intramuscular fat content in longissimus muscle of pigs |
| Journal: | Animal genetics, 2021, 52(5):633-644 |
| Links: |
PubMed | Abstract | List all data
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