| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
18.8-18.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs319452131 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 0.004 | | Dominance effect: | 0.03 |
| Additive effect: | 0.52 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were crossbred Landrace x Yorkshire barrows. |
| Breeds associated:
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| Design: | Pigs were genotyped using the Affymetrix Axiom 650K Porcine Genotyping Array and association analysis was performed for blood count traits before and after polymicrobial infectious challenge. A total of 465,910 SNPs were used for analysis. |
| Analysis: | Univariate and multivariate single-step GWAS were performed using mixed linear models. |
| Software: | FImpute, BLUPF90, PLINK 1.90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Bai X, Yang T, Putz AM, Wang Z, Li C, Fortin F, Harding JCS, Dyck MK; PigGen Canada, Dekkers JCM, Field CJ, Plastow GS |
| Affiliation: | Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada |
| Title: | Investigating the genetic architecture of disease resilience in pigs by genome-wide association studies of complete blood count traits collected from a natural disease challenge model |
| Journal: | BMC genomics, 2021, 22(1): 535 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | 2 weeks after polymicrobial infectious challenge |
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