| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
73.6-73.6 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80902848 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 3.15% | | P_values | 0.0016 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Suhuai pigs or commercial hybrid pigs (Pietrain x Duroc) x (Landrace x Yorkshire). |
| Breeds associated:
n/a
|
| Design: | Pigs were genotyped using the GeneSeek GGP Porcine 80K SNP BeadChip and GWAS was performed for intramuscular fat content. A total of 50,766 SNPs were used for analysis. |
| Analysis: | Genome-wide efficient mixed-model analysis (GEMMA) and linkage disequilibrium adjusted kinships were used for GWAS. |
| Software: | DMU, qqman in R, PLINK v1.90, Haploview 4.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wang B B, Hou L M, Zhou W D, Liu H, Tao W, Wu W J, Niu P P, Zhang Z P, Zhou J, Li Q, Huang R H, Li P H |
| Affiliation: | Institute of Swine Science, Nanjing Agricultural University, Nanjing 210095, China; Huaian Academy, Nanjing Agricultural University, Huaian 223005, China |
| Title: | Genome-wide association study reveals a quantitative trait locus and two candidate genes on Sus scrofa chromosome 5 affecting intramuscular fat content in Suhuai pigs |
| Journal: | Animal : an international journal of animal bioscience, 2021, 15(9): 100341 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
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| Comments: | GWAS verification in 330 Suhuai pigs |
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