| QTL Map Information |
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| Chromosome: | 3 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
89.9-89.9 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81373452 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
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P_values | 1.57E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were 306 Suhuai pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the GeneSeek GGP-Porcine 80K SNP BeadChip, and GWAS was performed for meat color. Genome-wide fixation coefficient (Fst) values were calculated for each SNP between the highest and lowest individuals sorted by the GEBV for meat color. A total of 52,640 SNPs were used for analysis. |
| Analysis: | A single-marker regression mixed linear model was used for GWAS. |
| Software: | PLINK 1.07, SAS 9.4, DMU, GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
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| Authors: | Liu H, Hou L, Zhou W, Wang B, Han P, Gao C, Niu P, Zhang Z, Li Q, Huang R, Li P |
| Affiliation: | Institute of Swine Science, Nanjing Agricultural University, Nanjing, China |
| Title: | Genome-Wide Association Study and FST Analysis Reveal Four Quantitative Trait Loci and Six Candidate Genes for Meat Color in Pigs |
| Journal: | Frontiers in Genetics, 2022, 13: 768710 |
| Links: |
PubMed | Abstract | List all data
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