| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
29.5-29.5 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
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P_values | 8.98E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | COL21A1 (collagen, type XXI, alpha 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were four-way crossbreds of Landrace, Yorkshire, Duroc, and Saba pigs. |
| Breeds associated:
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| Design: | GWAS was performed for fatness-related traits based on specific-locus amplified fragment sequencing (SLAF-seq). A total of 227,921 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used. |
| Software: | GEMMA, GCTA, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wang H, Wang X, Yan D, Sun H, Chen Q, Li M, Dong X, Pan Y, Lu S |
| Affiliation: | Faculty of Animal Science and Technology, Yunnan Agricultural University, No. 95 of Jinhei Road, Kunming, 650201, Yunnan, China |
| Title: | Genome-wide association study identifying genetic variants associated with carcass backfat thickness, lean percentage and fat percentage in a four-way crossbred pig population using SLAF-seq technology |
| Journal: | BMC Genomics, 2022, 23(1):594 |
| Links: |
PubMed | Abstract | List all data
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