| QTL Map Information |
|---|
| Chromosome: | 9 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
86.9-86.9 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81253220 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.96% | | P_values | 9.91E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Beijing Black pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using the Illumina porcine 50K BeadChip, and GWAS was performed for loin muscle area. A total of 35,401 SNPs were used for analysis. |
| Analysis: | A single-locus, mixed linear model (EMMAX: Efficient Mixed-Model Association eXpedited) was used. |
| Software: | PLINK v1.90, SAMtools v1.6.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Hou R, Chen L, Liu X, Liu H, Shi G, Hou X, Zhang R, Yang M, Niu N, Wang L, Zhang L |
| Affiliation: | Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China |
| Title: | Integrating Genome-Wide Association Study with RNA-Sequencing Reveals HDAC9 as a Candidate GeneInfluencing Loin Muscle Area in Beijing Black Pigs |
| Journal: | Biology, 2022, 11(11):1635 |
| Links: |
PubMed | Abstract | List all data
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