| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
159.7-159.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs331028622 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.25E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White pigs from two different lines (Canadian and French). |
| Breeds associated:
|
| Design: | Animals were genotyped using the GeneSeek GGP Porcine HD array, and GWAS were performed for age at 100 days and backfat thickness. A total of 41,172 (Canadian line) 40,506 (French line) SNPs were used for analysis. |
| Analysis: | A mixed model was used. |
| Software: | PLINK v1.90, GCTA v1.93.3beta, METAL, VCFtools |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Shi L, Wang L, Fang L, Li M, Tian J, Wang L, Zhao F |
| Affiliation: | Key Laboratory of Animal Genetics, Breeding and Reproduction (Poultry) of Ministry of Agriculture and Rural Affairs, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China |
| Title: | Integrating genome-wide association studies and population genomics analysis reveals the genetic architecture of growth and backfat traits in pigs |
| Journal: | Frontiers in Genetics, 2022, 13: 1078696 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | combined population |
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