| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
164.8-164.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs341825576 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 10.14% | | P_values | 5.25E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #264199
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | A four-way crossbred pig population was used; animals were offspring of seven hybrid boars (Duroc x Saba) and 37 hybrid sows (Yorkshire x (Landrace x Saba)). |
| Breeds associated:
|
| Design: | Animals were genotyped for SNPs throughout the entire genome, and GWAS were performed for meat quality traits. A total of 227,921 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used. |
| Software: | GATK, SAMtools, PLINK, GEMMA, GCTA, ADMIXTURE, qqman in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Huiyu Wang, Xiaoyi Wang, Mingli Li, Hao Sun, Qiang Chen, Dawei Yan, Xinxing Dong, Yuchun Pan and Shaoxiong Lu |
| Affiliation: | Faculty of Animal Science and Technology, Yunnan Agricultural University, Kunming, Yunnan, China |
| Title: | Genome-wide association study reveals genetic loci and candidate genes for meat quality traits in a four-way crossbred pig population |
| Journal: | Front Genet., 2023, Feb 6;14:1001352 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #36814900
Add your comments
Note similar findings
Note contradictions
|
